Evolutionary genomics of speciation and species differences

We study the evolutionary genomics of species barriers in several model plant groups, including ecologically important species of the ‘model tree’ genera Populus (poplars, aspens, cottonwoods) and Salix (willows), or the ´evo-devo´ model plant group Antirrhinum (snapdragons). In Populus, much of our research has been focused on the two ecologically divergent Eurasian poplar species Populus alba (White poplar) and P. tremula (European aspen). The former is a foundation species in flood-plain forests and the latter is an upland pioneer. Numerous ecological differences separate these species, including divergent abiotic tolerances (flooding, drought), biotic tolerances (defence against herbivores and pathogens), and flowering phenology. Candidate traits and genes relevant to these ecological traits have been identified, using whole genome sequencing (WGS) and complementary approaches aimed at specific genetic pathways. 

Much of our research on Populus has made use of natural hybrid zones for identifying genomic regions and candidate gene variants that cross the species barrier more or less frequently than expected under neutrality. We have used poplar hybrid zones to study the genomic basis of species isolation and the potential for adaptive introgression across species boundaries using high throughput sequencing. Ongoing work extends this research to the entire species complex of white poplars in Europe and Asia, with special emphasis on understanding the genetic basis of traits involved in response to abiotic stresses, herbivory, pathogen attack, and other biotic interactions.

Genetics of adaptation to new environments

We study the genetics of adaptation to new environments in ecologically important, outcrossing plant species. Understanding the genomic basis of local adaptation is crucial for assessing the conditions under which organisms will be likely to adapt successfully in situ to global (e.g. climate) change. We started with Populus tremula and P. alba because local populations of these species are close to random mating, which allows us to make efficient use of the tools of population genomics for studying the signature of local adaptation. Work by our group and collaborators has used conventional genetic markers and whole genome sequencing to identify genes and markers that are more divergent between local populations than expected under neutrality, and markers with unusual signatures of diversity in particular populations, indicative of ‘selective sweeps’. An important future goal of this work is to understand how species´ biogeographic history affects the adaptively important genetic variation now available for adaptation to environmental change.

Evolution of diversity in highly structured and species-rich environments

We are engaged in ecological & evolutionary genomics work in several biodiversity ´hot spots´ around the world, including the Neotropics, Southern Africa, and Southeast Asia. Common themes of these projects are (1) the goal to understand the evolution and maintenance of genomic diversity in highly structured and species-rich environments, (2) the transfer of knowledge and techniques from model systems such as Populus to highly speciose organismal groups. This research is carried out in collaboration and has thus far been supported by the Brazilian CNPq and CAPES, the Swiss SNF, the Portuguese FCT, and the Chinese Academy of Sciences.

Our current focus of this research is on species diversification in neotropical mountains, using bromeliads (Bromeliaceae) and palms (Arecaceae) as exemplary model plant radiations. Within an established international research consortium, we use whole genome and targeted resequencing approaches to study the origin and maintenance of biological diversity in these groups across a wide range of spatial, temporal, and taxonomic scales. Our overarching goal is to combine multiple layers of data from population genomics, phylogenomics, molecular phenotypes, and ecology to yield a comprehensive understanding of the drivers and limits of neotropical radiations with unprecedented breath and depth. In bromeliads, this research benefits greatly from locally available living collections and long-standing expertise of our group in the taxonomy, systematics, evolutionary biology, and population genetics of this ecologically important ´text book´plant radiation.

Conquering the world: what makes plants go global?

Plant distributional patterns across the entire planet are not trivial in terms of more recent phylogeographic (i.e. genetic) data. Many arctic-alpine plants show amphi-Atlantic and amphi-Beringian connections, however, with often complex idiosyncratic substructure. Much less is known of the southern hemisphere where high phylogeographical divergence observed among organism lineages in South America may be due to high levels of undocumented species diversity. Different patterns are observed so far in Australia and in New Zealand. In a project funded by the Austrian Science Foundation (FWF), we investigate Deschampsia cespitosa, a grass species that can thrive across a variety of habitats and has established populations in similar habitats in regions separated by thousands of kilometers. We focus on its global genetic structure in the search for clues for its worldwide distribution.

Other high-priority topics in plant evolutionary genomics & systematics

We are involved in a range of other collaborative and third-party funded research projects revolving around key topics in plant ecology & evolution, including research on DNA barcoding and community ecology in tropical dipterocarp forests of Southeast Asia, inter-population admixture and adaptive trait diversity in introduced Douglas fir trees in Europe, the processes driving the adaptive radiation of tropical trees in New Caledonia in the southwest Pacific Ocean (all projects funded by the Austrian Science Foundation FWF), the diversity and evolution of floral morphospace, and the evolution of island endemics. We also continue to engage in selected conservation and floristics projects, e.g. on distributions and genetic diversity of Dianthus species in the Austrian National Park Gesäuse, the ecological impact of invasive trees on grasslands in UNESCO World Heritage Site Wachau, and the further development of the Flora of Austria and surrounding Central Europe (last edition published 2008). We also contribute significantly to worldwide research on plant evolution and changes to plant diversity via our herbarium, which contains ca 1,5 Mio specimens currently undergoing digitization.

updated on Jan 2019